miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|120541458|gb|EH361341.1|EH361341 GTGGCGAACAACCGGCGGCAAATGTTAGACCTTAGCTGTGGGAGGAAGATTCAGGCCCGGACCCAGACGATCTGCTCGAT
CAAGGCTACACCGATTCGAACGGCGAGTTCCAGCTTCAGGGTGCAACTGTGGAAACGACACCAATCGACCCCATTCTGAA
GGTGTATCACGAATGCAATGACGTCACAGGCTTCCTAGGGGTTCCGAAGCCTGGCAGCCGAAAGGTGAAATTCTCCCTGC
CTGACAAGTACATCACTGACGGAATGGTTCCCCAGAAGACGATCAACATCGGAACGATTAACTTGGAAGTCGAATTCATG
GACGAGGGACGAGAATACATCGTTGACTAGAAAGCGCTCTACCATCAGCCTAGATCTTACCTACTGATCTTACTGAAACT
TACTGATCTACTTAAACCGCATTCTCTTCTCTTCAGGGATCACGGCCAGTGAGCTGCTTAAACAAATTTGTTAGTTATTT
AGAAAAGTAACACCCACTTCCCTGTTTCCTATTCTTCATTATTTTGAAGCAATCATAACCCATTCAACCGCTAAATACCT
TTCAGACGATTGAGCAGATGGCTGGCCTTGATAATTGGTATTGTACAAATATCACTGTGTTAGGGTACGTAATAATAAAT
TTATTTCTATCTGAACATTGTGTTATTG




Most similar to sp|Q22285|TTR46_CAEEL

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q22285|TTR46_CAEEL Transthyretin-like protein 46
           OS=Caenorhabditis elegans GN=ttr-46 PE=2 SV=1
          Length = 179

 Score =  148 bits (373), Expect = 4e-35
 Identities = 72/114 (63%), Positives = 83/114 (72%)
 Frame = +3

Query: 3   GEQPAANVRP*LWEEDSGPDPDDLLDQGYTDSNGEFQLQGATVETTPIDPILKVYHECND 182
           G  PAANVR  LWEED+GPDPDDLLDQGYTD+NGEF LQG T E TPIDP+ KVYH+C+D
Sbjct: 32  GNGPAANVRVKLWEEDTGPDPDDLLDQGYTDANGEFSLQGGTAELTPIDPVFKVYHKCDD 91

Query: 183 VTGFLGVPKPGSRKVKFSLPDKYITDGMVPQKTINIGTINLEVEFMDEGREYIV 344
                   KPG+RKVK +LP  YIT G V +KT +IG +NLE  F  E RE +V
Sbjct: 92  -----SKLKPGARKVKLALPKSYITSGKVAKKTFDIGVLNLETVFAKEERELLV 140